Resources

Tip

The RD-CDM paper has now been published at Nature Scientific Data. You can read it here!

In here you find all resources that are available in the RD-CDM to download.

Hint

Here you can find the general RD-CDM LinkML schema file: RD-CDM LinkML general schema.

Hint

Here you can find more information on LinkML and how to use it: LinkML.

RD-CDM v2.0.2

The RD-CDM v2.0.2 is the latest version of the Rare Disease Common Data Model. It is based on the RD-CDM v2.0.0 and includes some minor changes to the data elements and value sets. The changes are documented in the _changelog.

The entire LinkML-based RD-CDM v2.0.2 can be downloaded as a JSON or CSV file:

  • Entire RD-CDM v2.0.2 JSON

  • Entire RD-CDM v2.0.2 CSV

The RD-CDM v2.0.2 consists of the following components:

  • Code Systems v2.0.2 JSON

  • Code Systems v2.0.2 CSV

  • Data Elements v2.0.2 JSON

  • Data Elements v2.0.2 CSV

  • Value Sets v2.0.2 JSON

  • Value Sets v2.0.2 CSV

The corresponding LinkML .yaml schema files can be found in the

RD-CDM v2.0.2 schema

and the

RD-CDM v2.0.2 code systems schema. RD-CDM v2.0.2 code systems schema. RD-CDM v2.0.2 code systems schema.

RD-CDM v2.0.0 (outdated)

Excel Table

The table provides an overview of the table columns used to depict our Rare Disease Common Data Model (RD-CDM). You can download the RD-CDM v2.0.0 in an Excel here:

or access it on: Figshare.

Note

Each column’s abbreviation, further definitions, and explanations see Background.

JSON Files

CSV Files

For additional details, see Background.